PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0024s0935.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 256aa    MW: 27404.6 Da    PI: 8.1374
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0024s0935.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.84e-20128162135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nC tt+TplWR+gp g+k+LCnaCG++y+k+++
  Kaladp0024s0935.1.p 128 CANCDTTSTPLWRNGPKGPKSLCNACGIRYKKEER 162
                          ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-19122174IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.114122158IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-14125163No hitNo description
Gene3DG3DSA:3.30.50.101.9E-17126162IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.84E-13127159No hitNo description
PROSITE patternPS003440128153IPR000679Zinc finger, GATA-type
PfamPF003208.9E-18128162IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MMHNNMSSYY SQSNGNQQSC YDYDYYCAAD PYGYSGFNAA TSSSTSSNVD CTLSLGTPST  60
RSDAGGEQTK KQSGRRSGNR VSNFCWDLLQ QTTLSSSKHS AAGTNSYSKG GRASGGGGGG  120
DPLVARRCAN CDTTSTPLWR NGPKGPKSLC NACGIRYKKE ERRASAAASA TSHGSGASAM  180
ESQYASSEHY YSNQSYTHHQ TQRMNCLFPA AANEYRYTDA DDGGSYEHSG NGGVSFLPWM  240
LNVADRPSLV HDFTR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109117GGRASGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241682.13e-67PREDICTED: GATA transcription factor 19-like
SwissprotQ8LC792e-51GAT18_ARATH; GATA transcription factor 18
TrEMBLM5VSX02e-66M5VSX0_PRUPE; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-46GATA family protein